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raw rna sequencing data  (Broad Clinical Labs)


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    Structured Review

    Broad Clinical Labs raw rna sequencing data
    Raw Rna Sequencing Data, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 781 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/raw+sequence+data/RNA+Sequencing/pm42869007-895-0-35
    Average 96 stars, based on 781 article reviews
    raw rna sequencing data - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    RNA Sequencing:

    Article Title: Transposable element splicing reveals a tumor-enriched class of gene-independent transcripts.
    Article Snippet: Article Transposable element splicing reveals a tumorenriched class of gene-independent transcripts

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https://singlecell.broadinstitute.org/single_cell/study/SCP975 , which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies.
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https:// singl ecell. broad insti tute. org/ single_ cell/ study/ SCP975, which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: Transcriptional dynamics of induced pluripotent stem cell differentiation into β cells reveals full endodermal commitment and homology with human islets.
    Article Snippet: Libraries were sequenced on the Illumina platform, with a coverage of 100,000 reads for each cell. .. Single-cell RNA sequencing data analysis Raw reads were processed using Macosko-Nemesh [30] (https:// github.com/broadinstitute/Drop-seq/releases) and UMI-tools (https://github.com/CGATOxford/UMI-tools) pipelines. ..

    Tissue:

    Article Title: Transposable element splicing reveals a tumor-enriched class of gene-independent transcripts.
    Article Snippet: Article Transposable element splicing reveals a tumorenriched class of gene-independent transcripts

    Sequencing:

    Article Title: Tumor-localized catalases can fail to alter tumor growth and transcriptional profiles in subcutaneous syngeneic mouse tumor models
    Article Snippet: RNA quality was assessed using a Fragment Analyzer (Agilent). .. Raw FASTQ sequencing data was converted to reads per gene using the Smart-seq2 pipeline within TerraBio (Broad Institute). .. Sequencing was performed on a Illumina NextSeq system.

    Article Title: Single-cell RNA sequencing reveals a mechanism underlying the susceptibility of the left atrial appendage to intracardiac thrombogenesis during atrial fibrillation.
    Article Snippet: .. We also thank Dr. Patrick T. Ellinor and his team for generously sharing their raw and processed sequence data (Broad Institute Single Cell Portal; study ID SCP498). ..

    other:


    Article Title: Mucosal macrophages govern intestinal regeneration in response to injury.
    Article Snippet: Flow cytometry analysis and cell sorting was carried out in Beckman coulter Gallios analyzer and Beckman coulter CytoFLEX SRT benchtop cell sorter respectively.

    Single Cell:

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https://singlecell.broadinstitute.org/single_cell/study/SCP975 , which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies.
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https:// singl ecell. broad insti tute. org/ single_ cell/ study/ SCP975, which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: Transcriptional dynamics of induced pluripotent stem cell differentiation into β cells reveals full endodermal commitment and homology with human islets.
    Article Snippet: Libraries were sequenced on the Illumina platform, with a coverage of 100,000 reads for each cell. .. Single-cell RNA sequencing data analysis Raw reads were processed using Macosko-Nemesh [30] (https:// github.com/broadinstitute/Drop-seq/releases) and UMI-tools (https://github.com/CGATOxford/UMI-tools) pipelines. ..

    Article Title: Single-cell RNA sequencing reveals a mechanism underlying the susceptibility of the left atrial appendage to intracardiac thrombogenesis during atrial fibrillation.
    Article Snippet: .. We also thank Dr. Patrick T. Ellinor and his team for generously sharing their raw and processed sequence data (Broad Institute Single Cell Portal; study ID SCP498). ..

    Control:

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https://singlecell.broadinstitute.org/single_cell/study/SCP975 , which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies.
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https:// singl ecell. broad insti tute. org/ single_ cell/ study/ SCP975, which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Injection:

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https://singlecell.broadinstitute.org/single_cell/study/SCP975 , which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..

    Article Title: The differential expression of MAGI2 in glomerulopathies and its application as a molecular discriminator of podocytopathies.
    Article Snippet: .. Single-cell RNA sequencing data (raw count matrices and accompanying metadata) were downloaded from the Broad Institute Single Cell Portal (Study ID: SCP975) https:// singl ecell. broad insti tute. org/ single_ cell/ study/ SCP975, which comprises murine glomerular single cell transcriptomes under control conditions and at day 1 and 5 (d1, d5) of nephrotoxic serum nephritis (NTS) as well as 7 days after Doxorubicin (20 mg/kgBW) injection. ..



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